We support biopharma companies accelerate discovery through knowledge base creation, data analysis, and custom solutions.

Data Curation

We understand the importance of having consistent and normalized metadata that can be used in machine learning applications that power pharmaceutical research.

Literature curation

gene variants, functional studies, guidelines, drug label, clinical trials

Pathway curation

KEGG, pharmacokinetic, pharmacodynamic

Dataset curation

GEO, ArrayExpress, TCGA

Ontology mapping

HPO, SNOMED, CDISC, MedDRA, custom ontologies

Data harmonization

concept identification, semantic unification

Gene variant scoring

ACMG classification of genetic variants

Knowledge Mining

Knowledge graphs have considerable value across a range of tasks, including drug repurposing, drug toxicity prediction and target gene-disease prioritization. Our knowledge mining services include:

Dataset lookup and literature search

searching for datasets and literature with specific attributes

Knowledge base creation

association of genetic variants or gene expression profiles with disease, drug response, or clinical outcome

Annotation of publications

genes, diseases, drugs, interactions for deep NLP pipelines

Bioinformatics

We can help answer scientific questions by analyzing complex, multi-omics data. Our bioinformatics services include:

Differential analysis

gene expression, proteomics, metabolomics

Single-cell analysis

complete scRNA-seq pipeline development from FASTQ to clustering

Genetic variant calling

DNA pipeline development to detect SNV, Indel, CNV, SV

Clinical trial data

survival analysis, significant treatment effect

Pathway analysis

gene set enrichment analysis

Machine Learning

development of predictive models

Data & Software Engineering

We combine scientific knowledge and technical expertise in software engineering to provide custom solutions that support practical biotech and pharmaceutical research and development.

Data wrangling

cleaning and unifying complex data sets in preparation for downstream analysis

Data visualization

data analysis reports with histograms, scatter plots, volcano plots, heatmaps, and more

Data migration

migration strategy development which includes selecting, preparing, extracting, and transforming data

Pipeline automation

development of bioinformatics task automations that support reproducibility and provide measures for fault-tolerance

Software Engineering

custom application development to integrate data visualization and pipeline launching

Cloud Development

cloud first systems development and integration

Contact Us

Our team of bioinformaticians, biologists, software engineers, and medical doctors are ready to support your research and development efforts in precision medicine, drug discovery, and translational medicine.

Email us at contact@genomicabio.com or call us at (248) 479-3623 to schedule an online meeting to discuss your project and get a quote.

Discuss project details, requirements, timeline, and volume.
Genomica provides an estimate of time, costs, deliverables, and risks.
Agreement is signed.
Project kick-off meeting.
Weekly meeting for updates.
Deliverable hand-over with documentation.